Index A | B | C | D | F | G | I | L | M | N | P | R | S | T | U A Algorithm Algorithms AnnData AnnDatas B Bar code Bar codes Barcode Barcodes Batch effect Benchmark Bulk RNA sequencing C Cell Cell barcode Cell state Cell type Cell type annotation Chromatin Cluster Clusters D Demultiplexing DNA Doublets Drop-seq Dropout F FASTQ reads G Gene expression matrix I Imputation Indrop L Library M MuData muon N Negative binomial distribution P PCR Pipeline Poisson distribution Promoter Pseudotime R RNA RT-qPCR S scanpy scverse Spike-in RNA T Trajectory inference U Unique Molecular Identifier (UMI)